Correlation between positions

You can plot correlation between modified positions within certain regions. This is as easy as:

~/src/modPhred/src/mod_correlation.py -i modPhred/PRJEB22772/mod.gz -r NC_000913.3:1-5000

This will generate something like that:

In addition, using below you can narrow those plots to only: * modifications from particular strand * and one modification from particular strand

~/src/modPhred/src/mod_correlation.py -i modPhred/PRJEB22772/mod.gz -r NC_000913.3:1-5000+
~/src/modPhred/src/mod_correlation.py -i modPhred/PRJEB22772/mod.gz -r NC_000913.3:1-5000+ --mod 6mA